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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttttctctcgatttctaatgtttccgacattcgtcattctcttactcaatctgtttctcttaatccccagAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAG

Basic information

species Arabidopsis thaliana
transcript AT2G22230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125098641|gb|EL154708.1|EL154708
EST:     AACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCA                         AATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATAT
genomic: AACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAgtaagatttt ... taatccccagAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATAT
EST: gi|124744891|gb|EH836053.1|EH836053
EST:     AACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCA                         AATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGA
genomic: AACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAgtaagatttt ... taatccccagAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgtttccgacattcgtcattctcttactcaatctgtttctcttaatccccagAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAG
                                      tttctcttaatcccc  CT-rich tract
                                          tcttaat  TA-rich tract