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gtcaattcagttcacaacctttacatgctttacttcttgattcgatgaactctgcagttaaaacataattctgaaagtgggatcatttgttgatgcagAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATCTTTCGCGCCGTACG
species | Arabidopsis thaliana |
transcript | AT2G21960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCTCGAATCCGCCATTAACAAG AAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGTEST: gi|124811162|gb|EH896028.1|EH896028
genomic: TTCTCTCGAATCCGCCATTAACAAGgtcaattcag ... gttgatgcagAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGT
EST: CTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAG AAAGATAGTAATGGTGTTAAGGAEST: gi|86072272|gb|DR368029.1|DR368029
genomic: CTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGgtcaattcag ... gttgatgcagAAAGATAGTAATGGTGTTAAGGA
EST: CTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAG AAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGT
genomic: CTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGgtcaattcag ... gttgatgcagAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGT
gatgaactctgcagttaaaacataattctgaaagtgggatcatttgttgatgcagAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATCTTTCGCGCCGTACG
tgttgat putative branch site (score: 4)
agttaaaacataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaattcagttcacaacctttacatgctttacttcttgattcgatgaactctgcagttaaaacataattctgaaagtgggatcatttgttgatgcagAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATCTTTCGCGCCGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT