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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgaactgggaacatccgattattcttccctttactatgttccacgctaggttcactggttgaagtaacagtaatttaaatttcactttggatgaaccagGTCCTGCTACCGTCATCTGTGATTATTTGTGTTATACGTTCATGTTCCTCTCAGTTGCGACTTCAAATCTTGTTGCTACCTCTCTTGCTCGGCAG

Basic information

species Arabidopsis thaliana
transcript AT2G21340.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21340.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S47_276V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------------ttgaactgggaacatccgattattcttccc------tttactatgttccac-gctaggttcactggttgaagta-acagtaattta---aatttcactttggatgaac--cagGTCCTGCTACCGTCATCTGTGATTATTTGTGTTATACGTTCATGTTCCTCTCAGTTGCGACTTCAAATCTTGTTGCTACCTCTCTTGCTCGGCAG
                                                                                    | || | |||  |  ||| |   |||        | || ||  |  ||| | |   |||||   |  | | | | | | | | |   || |   | |||| |||    ||||||| |  |||||  | |||||| |  ||||||||  ||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||| |   ||
gtaagtaactcgtttagtttcatgttatgcactgttttcacgattgaaactcgattctactccagctcaagtgatgctacacacgcacggagaatgttagataaactttcttgaagaatgtagtacatctcacagttgtcttcacatatcaaggcacaaaatgactaagtcaaatgttccttggttgatttgcagGTCCGGGAACCGTTTTATGTGATCAAGTGTGTTATGTGTTTATGTTTCTCTCCGTTGCAACTTCAAATCTTGTCGCTACCTCACTTGCGCACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaggttcactggttgaagtaacagtaatttaaatttcactttggatgaaccagGTCCTGCTACCGTCATCTGTGATTATTTGTGTTATACGTTCATGTTCCTCTCAGTTGCGACTTCAAATCTTGTTGCTACCTCTCTTGCTCGGCAG
                 aagtaac  putative branch site (score: 2)
                 aagtaacagtaattta  TA-rich tract