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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttcaattgtacaaaggaactagcttttttgctctcaagaacagttagttatttaccaaagtcttatatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAATGATCTTTTGTCCTCTGGGATCATTCAAAGTTTG

Basic information

species Arabidopsis thaliana
transcript AT2G21070.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21070.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os02g02880.1 (Oryza sativa), 3'ss of exon 1
---------------------gtatgatttcaattgtacaaaggaactagcttttttgctctcaagaacagtta-gttatttaccaaagtcttatatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAATGATCTTTTGTCCTCTGGGATCATTCAAAGTTTG
                     || | ||    || ||        | || ||| |||  ||| |   |     | |  ||||  |     ||    |    ||||||||||| ||||||||||| ||||| ||||| || || ||||| |||||||| || |||||  | |||||| | || || |   |||| | |    | 
gctcaatatgttattggctaagtgtcatgcatatggtttgtgatcaatatcttatttaatctaatatatgaacatgacatttgtcgctaactaccgt---cagGTGGATTCCGGATGGACAGCTGTGCCCTACTGTGCCAAACAGATCCAATTACATCCACTGGATTGAGGATCTTCTCTCATCAGACCTCATACCACCAATA

upper sequence: AT2G21070.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G090156_T01 (Zea mays), 3'ss of exon 1
------gtatgatttcaattgtacaaaggaactagcttttttgctctcaaga--------acagttagttatttacca---aagtctta--tatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAATGATCTTTTGTCCTCTGGGATCATTCAAAGTTTG
        |   ||     | | |   |||  |   |||  | |  || ||         ||| ||  |||   || |    | |||||  ||    |||||||||||| ||||||||||| ||||| |||||||| || || || || |||||||| |||||| | |||||| | ||||| |   | || | |    | 
gcacgcacactgttcgctctatgctttggaggtgattttcatccagtctagttatgctacacaattgtttaaacacaattttaatcttagctactgttagGTGGATTCCAGATGGACAGCTCTGCCCGACTGTTCCAAACAGGTCCAACTACATTCACTGGATCGAGGATCTTCTCTCCTCAGATCTGATCCCACCAATA

upper sequence: AT2G21070.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv03s0038g02100.t01 (Vitis vinifera), 3'ss of exon 1
------------gtatgatttcaattgtacaaaggaactagcttttttgctctcaagaacagt-----tagtt-atttacc-aaagtcttatatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAATGATCTTTTGTCCTCTGGGATCATTCAAAGTTTG
             | ||   |  |   | | || |  |  |||| | || |     ||   ||     | ||| |||||   ||| | | |  | |  ||||||||||||||||| ||||||||||| || ||||| || ||||| || || || ||||||||  | |||||| |||| ||||  || ||||  |     
attcgccaagctttttgtcatagaaatttccaaagttcaggcttatgtgttaatgggatatgtgtttgtggttgatttagtgaaaatatgagttgtgcagGTGGATTCCTGATGGGCAGCTTTGCCCTACAGTTCCAAACAGATCAAACTATATCCATTGGATTGAAGATCTTCTGTCTTCTGACATTATTCCTAAGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380278|gb|EG422870.1|EG422870
EST:     ACCCGAGAGCTCACTCGTGTCCTCCTTCTACATGACCATGGCGTCAACTG                         GTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTA
genomic: ACCCGAGAGCTCACTCGTGTCCTCCTTCTACATGACCATGGCGTCAACTGgtatgatttc ... atatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTA
EST: gi|116380279|gb|EG422871.1|EG422871
EST:     ACCCGAGAGCTCACTCGTGTCCTCCTTCTACATGACCATGGCGTCAACTG                         GTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTA
genomic: ACCCGAGAGCTCACTCGTGTCCTCCTTCTACATGACCATGGCGTCAACTGgtatgatttc ... atatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTA
EST: gi|116380274|gb|EG422866.1|EG422866
EST:     ACCCGAGAGCTCACTCGTGTCCTCCTTCTACATGACCATGGCGTCAACTG                         GTGGATTCCTGATGGACAGCTTTGCCCATCTGTTCCTAATAGA
genomic: ACCCGAGAGCTCACTCGTGTCCTCCTTCTACATGACCATGGCGTCAACTGgtatgatttc ... atatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcttttttgctctcaagaacagttagttatttaccaaagtcttatatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAATGATCTTTTGTCCTCTGGGATCATTCAAAGTTTG
                                     aaagtcttatatatat  TA-rich tract