Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttttctcactaaacttttattccttattgttatgattagtcttcttggttggtctatatctttgtgtattggttacattttggcagGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAAGGCGAGGACTTTCATCTCCCACCTGGTAGACAACGGGAACTAGGTTTTA

Basic information

species Arabidopsis thaliana
transcript AT2G19860.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164136942|gb|ES083123.1|ES083123
EST:     CCTCATTTGATGACCGGGAAGTCACAT                         GAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
genomic: CCTCATTTGATGACCGGGAAGTCACATgtcagttttc ... attttggcagGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
EST: gi|125166019|gb|EL192016.1|EL192016
EST:     CTATTCCTCCTCATTTGATGACCGGGAAGTCACAT                         GAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
genomic: CTATTCCTCCTCATTTGATGACCGGGAAGTCACATgtcagttttc ... attttggcagGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
EST: gi|86059507|gb|DR355264.1|DR355264
EST:     AATTCTGAGAAGAATCTATTCCTCCTCATTTGATGACCGGTAAGTCACAT                         GAATTATTCGATTTTATCGCTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
genomic: AATTCAAAGAAGAATCTATTCCTCCTCATTTGATGACCGGGAAGTCACATgtcagttttc ... attttggcagGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
EST: gi|163967580|gb|ES045961.1|ES045961
EST:     ATTTGATGACCGGGAAGTCACAT                         GAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
genomic: ATTTGATGACCGGGAAGTCACATgtcagttttc ... attttggcagGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
EST: gi|164010566|gb|ES063868.1|ES063868
EST:     TTTGATGACCGGGAAGTCACAT                         GAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA
genomic: TTTGATGACCGGGAAGTCACATgtcagttttc ... attttggcagGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgattagtcttcttggttggtctatatctttgtgtattggttacattttggcagGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACAGAAGGCGAGGACTTTCATCTCCCACCTGGTAGACAACGGGAACTAGGTTTTA
                       tatatcttt  TA-rich tract