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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagctctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGG

Basic information

species Arabidopsis thaliana
transcript AT2G19730.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19730.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagc-tctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGG
                                                                            | | || ||  | |  |   | | | ||||   ||  | |||       ||||  |   |  | |   |     | |||  | |   |||||||   ||    | ||      ||||||||||| ||||| |  |  |||||||||||||| || ||||| |||||||| ||| |||||||||||||||| |   | ||  | ||| 
---------------------------------------------------------------------------ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggt--tgttggttttggttatgtagGCGAAG-----CGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG-

upper sequence: AT2G19730.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os02g57540.1 (Oryza sativa), 3'ss of exon 1
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagctctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGG
                                                                           ||  |  |   |  |  |  |   | |   ||  ||    | |   |  | |||| |  |  || || | | |  |  | ||   || | |   ||| || || ||       ||||||||||| ||||| |  |  ||| |||||||||| |||||||| |||||||| ||| | ||||||||||| || |   | ||  | ||| 
--------------------------------------------------------------------------ttgctgccagcgttgtgtaatg--tttttgcgtgttaatggtcacttagtggtctgatggt-catttgctatggtgtaatggt-cgatctgtttggtgatgtagCTACAG---CGAAATGGCGACGGTTCCGGAGCCTTTGTTCTGGGAGATTGTGAAGAAGAACAACTGCTTCCTCGTGAAGCAGTTTGGAAACAGCAATGCCAAG-

upper sequence: AT2G19730.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G088060_T02 (Zea mays), 3'ss of exon 2
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagctctatagt-agtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGG
                                                                            |||  ||||      |||   |     |  | |||   ||    |  |     ||  |  | || |    ||     ||  |   ||||| |      |    | |||     ||||||||||| ||||||||  |  |||||||| |||| |||| ||| |||||||  ||| ||||||||||||| || |  || ||  | ||| 
------------------------------------------------------------------------aaccgtaactattcc---ccagatggtcaggtgatcagttttctccctgtttaatgttgcaagggaatctcacatttgccagt--tgatattttcgactatttagGCGAAGG-----GAAATGGCGACCGTTCCAGGGGATCTGATCTGGCAGATTGTGAGGAAGAACAACTCCTTCCTGGTGAAGCAGTTTGGCAACGGCAATGCCAAG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86066005|gb|DR361762.1|DR361762
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|164183074|gb|ES084568.1|ES084568
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTCTCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGAC
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGAC
EST: gi|86066022|gb|DR361779.1|DR361779
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066001|gb|DR361758.1|DR361758
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066020|gb|DR361777.1|DR361777
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066012|gb|DR361769.1|DR361769
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066026|gb|DR361783.1|DR361783
EST:     AAAATCTCTCGATCTCTCTCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: AAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|124958178|gb|EL032940.1|EL032940
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGA
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGA
EST: gi|86066014|gb|DR361771.1|DR361771
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066023|gb|DR361780.1|DR361780
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|125142359|gb|EL179711.1|EL179711
EST:     GCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAA
genomic: GCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAA
EST: gi|86066006|gb|DR361763.1|DR361763
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|116406470|gb|EG449062.1|EG449062
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|125285218|gb|EL299303.1|EL299303
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGA
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGA
EST: gi|116438644|gb|EG481236.1|EG481236
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAGTGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86065999|gb|DR361756.1|DR361756
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066003|gb|DR361760.1|DR361760
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066019|gb|DR361776.1|DR361776
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066017|gb|DR361774.1|DR361774
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|116452423|gb|EG495015.1|EG495015
EST:     CGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066024|gb|DR361781.1|DR361781
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066028|gb|DR361785.1|DR361785
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|116467038|gb|EG509630.1|EG509630
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|164020221|gb|ES176836.1|ES176836
EST:     TCCGGCGCCACCATTAAAATCTCTCGATCTCTCTCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGAC
genomic: TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGAC
EST: gi|86066008|gb|DR361765.1|DR361765
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066016|gb|DR361773.1|DR361773
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACA                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|124707567|gb|EH798969.1|EH798969
EST:     TCTGCGAAATTCCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: TCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|164220594|gb|ES051042.1|ES051042
EST:     GCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: GCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066010|gb|DR361767.1|DR361767
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|125000457|gb|EL072726.1|EL072726
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAA-TGGCGACAGTTCCAGG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGG
EST: gi|47830640|gb|CK120324.1|CK120324
EST:     CACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|116467041|gb|EG509633.1|EG509633
EST:     TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGGTAG                      
genomic: TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC----Ggtgagcttag ... gtgaagg
EST: gi|86066009|gb|DR361766.1|DR361766
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|124897850|gb|EH974064.1|EH974064
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAA
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAA
EST: gi|164039639|gb|ES184965.1|ES184965
EST:     CCACCATTAAAATCTCTCGATCTCTCTCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAA
genomic: CCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAA
EST: gi|86075723|gb|DR371480.1|DR371480
EST:     TCCGGCGCCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCNCG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAA
genomic: TCCGGCG-CCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066025|gb|DR361782.1|DR361782
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|124987679|gb|EL060120.1|EL060120
EST:     TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGG
genomic: TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGG
EST: gi|86066004|gb|DR361761.1|DR361761
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTA--TGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|164022263|gb|ES109042.1|ES109042
EST:     CGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|116438819|gb|EG481411.1|EG481411
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066021|gb|DR361778.1|DR361778
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066027|gb|DR361784.1|DR361784
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066013|gb|DR361770.1|DR361770
EST:     TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066011|gb|DR361768.1|DR361768
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAA
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066015|gb|DR361772.1|DR361772
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAA
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|125299253|gb|EL313338.1|EL313338
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGG
EST: gi|86066000|gb|DR361757.1|DR361757
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|86066018|gb|DR361775.1|DR361775
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
EST: gi|125235557|gb|EL249642.1|EL249642
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGG
EST: gi|125015976|gb|EL088245.1|EL088245
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTG
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTG
EST: gi|86066007|gb|DR361764.1|DR361764
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... gtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGG
                             tatcattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagctctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA