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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagctctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCT

Basic information

species Arabidopsis thaliana
transcript AT2G19730.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19730.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagc-tctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCT---
                                                                            | | || ||  | |  |   | | | ||||   ||  | |||       ||||  |   |  | |   |     | |||  | |   |||||||   ||    | ||      ||||||||||| ||||| |  |  |||||||||||||| || ||||| |||||||| ||| |||||||||||||||| |   | ||  |    
---------------------------------------------------------------------------ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggt--tgttggttttggttatgtagGCGAAG-----CGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG

upper sequence: AT2G19730.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os02g57540.1 (Oryza sativa), 3'ss of exon 1
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagctctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCT---
                                                                           ||  |  |   |  |  |  |   | |   ||  ||    | |   |  | |||| |  |  || || | | |  |  | ||   || | |   ||| || || ||       ||||||||||| ||||| |  |  ||| |||||||||| |||||||| |||||||| ||| | ||||||||||| || |   | ||  |    
--------------------------------------------------------------------------ttgctgccagcgttgtgtaatg--tttttgcgtgttaatggtcacttagtggtctgatggt-catttgctatggtgtaatggt-cgatctgtttggtgatgtagCTACAG---CGAAATGGCGACGGTTCCGGAGCCTTTGTTCTGGGAGATTGTGAAGAAGAACAACTGCTTCCTCGTGAAGCAGTTTGGAAACAGCAATGCCAAG

upper sequence: AT2G19730.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G088060_T02 (Zea mays), 3'ss of exon 2
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagctctatagt-agtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCT---
                                                                            |||  ||||      |||   |     |  | |||   ||    |  |     ||  |  | || |    ||     ||  |   ||||| |      |    | |||     ||||||||||| ||||||||  |  |||||||| |||| |||| ||| |||||||  ||| ||||||||||||| || |  || ||  |    
------------------------------------------------------------------------aaccgtaactattcc---ccagatggtcaggtgatcagttttctccctgtttaatgttgcaagggaatctcacatttgccagt--tgatattttcgactatttagGCGAAGG-----GAAATGGCGACCGTTCCAGGGGATCTGATCTGGCAGATTGTGAGGAAGAACAACTCCTTCCTGGTGAAGCAGTTTGGCAACGGCAATGCCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124749117|gb|EH839247.1|EH839247
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTTCCAGGA
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGA
EST: gi|86066021|gb|DR361778.1|DR361778
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066018|gb|DR361775.1|DR361775
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066023|gb|DR361780.1|DR361780
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066014|gb|DR361771.1|DR361771
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|125304300|gb|EL318385.1|EL318385
EST:     CATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTTCCAGGACAA
genomic: CATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAA
EST: gi|86066006|gb|DR361763.1|DR361763
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066008|gb|DR361765.1|DR361765
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066009|gb|DR361766.1|DR361766
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|125308435|gb|EL322520.1|EL322520
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTTCCAGG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGG
EST: gi|86066019|gb|DR361776.1|DR361776
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066026|gb|DR361783.1|DR361783
EST:     AAAATCTCTCGATCTCTCTCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: AAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066013|gb|DR361770.1|DR361770
EST:     TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066007|gb|DR361764.1|DR361764
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066001|gb|DR361758.1|DR361758
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066011|gb|DR361768.1|DR361768
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066015|gb|DR361772.1|DR361772
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066004|gb|DR361761.1|DR361761
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTA--TGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066017|gb|DR361774.1|DR361774
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|116452423|gb|EG495015.1|EG495015
EST:     CGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066003|gb|DR361760.1|DR361760
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|116467038|gb|EG509630.1|EG509630
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|124941818|gb|EL018140.1|EL018140
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTT
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTT
EST: gi|86066010|gb|DR361767.1|DR361767
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|116406470|gb|EG449062.1|EG449062
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|164221605|gb|ES035867.1|ES035867
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTCTCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTTCCAGG
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGG
EST: gi|86065999|gb|DR361756.1|DR361756
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066024|gb|DR361781.1|DR361781
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066000|gb|DR361757.1|DR361757
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|116438644|gb|EG481236.1|EG481236
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAGTGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066027|gb|DR361784.1|DR361784
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066025|gb|DR361782.1|DR361782
EST:     CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066028|gb|DR361785.1|DR361785
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|116467041|gb|EG509633.1|EG509633
EST:     TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066022|gb|DR361779.1|DR361779
EST:     CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066005|gb|DR361762.1|DR361762
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|86066016|gb|DR361773.1|DR361773
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         --A-GTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|124981382|gb|EL054254.1|EL054254
EST:     TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTT
genomic: TCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTT
EST: gi|125231157|gb|EL245242.1|EL245242
EST:     CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTT
genomic: CGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTT
EST: gi|86066020|gb|DR361777.1|DR361777
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCAC-                         ---GGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGT
EST: gi|164205649|gb|ES037066.1|ES037066
EST:     GGCGCCACCATTAAAATCTCTCGATCTCTCTCTGCGAAATTTCACG                         GTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGAT
genomic: GGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGgtgagcttag ... tgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCT
                                 tatcattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagctctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA