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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcttctctctttatctatcattctctctcactgcttcacgaaatctctcttaagcttcatttgttgtgtttgcttcttttatagTTGACGCCACAGTTTGGTTTCTCACAGTCACCGATCGG

Basic information

species Arabidopsis thaliana
transcript AT2G18876.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125287094|gb|EL301179.1|EL301179
EST:     CTACACGACGGTTATCGATGTCATTGACTGTACCGGAGTTCGATTTCAGA                         TTGACGCCACAGTTTG
genomic: CTACACGACGGTTATCGATGTCATTGACTGTACCGGAGTTCGATTTCAGAgtaattcttc ... tcttttatagTTGACGCCACAGTTTG
EST: gi|86074414|gb|DR370171.1|DR370171
EST:     ACACGACGGTTATCGATGTCATTGACTGTACCGGAGTTCGATTTCAGA                         TTGACGCCACAGTTTGGTTTCTCACAGTCACCGATCGG
genomic: ACACGACGGTTATCGATGTCATTGACTGTACCGGAGTTCGATTTCAGAgtaattcttc ... tcttttatagTTGACGCCACAGTTTGGTTTCTCACAGTCACCGATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgcttcacgaaatctctcttaagcttcatttgttgtgtttgcttcttttatagTTGACGCCACAGTTTGGTTTCTCACAGTCACCGATCGG
 ctctcac  putative branch site (score: 3)
                                     tgtttgcttctttt  putative PPT
                                            ttcttttata  TA-rich tract