1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgttttcgtttcttgtaactcttcttgagattgtctgtagttctaaaactcgattttggatctaattgttgctcatcttcgattggattgagttggatcattgaattgatttgattattagaaagtttgtaacttggagctaagaaagctgattcctttttcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCGGGAGCTGT
species | Arabidopsis thaliana |
transcript | AT2G17730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056626|gb|DR352383.1|DR352383
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056631|gb|DR352388.1|DR352388
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056625|gb|DR352382.1|DR352382
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056624|gb|DR352381.1|DR352381
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTA-CATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056632|gb|DR352389.1|DR352389
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTA-CATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056623|gb|DR352380.1|DR352380
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056633|gb|DR352390.1|DR352390
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTAC-ATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGCGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTEST: gi|86056627|gb|DR352384.1|DR352384
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTG-GGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACT
EST: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056622|gb|DR352379.1|DR352379
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGEST: gi|86056630|gb|DR352387.1|DR352387
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
EST: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAG TGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
genomic: TGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttc ... tcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTG
tattagaaagtttgtaacttggagctaagaaagctgattcctttttcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCGGGAGCTGT
ttcctttttcatgttc CT-rich tract
tttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttcgtttcttgtaactcttcttgagattgtctgtagttctaaaactcgattttggatctaattgttgctcatcttcgattggattgagttggatcattgaattgatttgattattagaaagtttgtaacttggagctaagaaagctgattcctttttcatgttcagTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAGAAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCGGGAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT