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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctataaggaactctctagcttgattcttaaactctgagcaattgtctttgatcaatcaccaccttataattgataaattctctcctttatgatttttatgagaatttgtttgatcaagtgttgataatttggttttaaggattaaatattttgatctgtgatgtttttgaggatttggtctttgtttgaagTATTGATTGTTACAGATTCTATAATGTGATCCTGATTTAGGATTTTAATTCGAGATAAATGGCGACAAATGCGTGCCTTGAGTCCGATTCGCTTCTACCT

Basic information

species Arabidopsis thaliana
transcript AT2G17540.3
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggattaaatattttgatctgtgatgtttttgaggatttggtctttgtttgaagTATTGATTGTTACAGATTCTATAATGTGATCCTGATTTAGGATTTTAATTCGAGATAAATGGCGACAAATGCGTGCCTTGAGTCCGATTCGCTTCTACCT
            ttttgat  putative branch site (score: 4)
                                          tctttgttt  putative PPT
     ttaaatattttgatct  TA-rich tract