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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcattctctatgttagacctagatctagaaattggcatgaattttgtagtattaagaacatttggaatctctagtatctgaagttgctttagaagaaagcaaggaatgtttatagttttctttgggtttatttttgtgaaagGTGAGGAGTCTTGAAGCTCAAGGAGTTCCATCGAAACAAGCTGAGGCAATAACTTCTGCTATTACTGAGGTTTTGAATGATAGCTTGGAAAATGTCTCTG

Basic information

species Arabidopsis thaliana
transcript AT2G16460.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164070702|gb|ES118264.1|ES118264
EST:     TCACGAAAGCTAATGGGAGACGTGCTTTTCTCGTTGATACATTGGCTCTG                         GTGAGGAGTCTTGAAGCTCAAGGAGTTCC
genomic: TCACGAAAGCTAATGGGAGACGTGCTTTTCTCGTTGATACATTGGCTCTGgtaatttcat ... tttgtgaaagGTGAGGAGTCTTGAAGCTCAAGGAGTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagaagaaagcaaggaatgtttatagttttctttgggtttatttttgtgaaagGTGAGGAGTCTTGAAGCTCAAGGAGTTCCATCGAAACAAGCTGAGGCAATAACTTCTGCTATTACTGAGGTTTTGAATGATAGCTTGGAAAATGTCTCTG
                                       tttattttt  CT-rich tract
                 aatgtttatagtttt  TA-rich tract