Sequence
atgc intronic sequence ATGC exonic sequence...agatcatagtaattatccacttgcttgatgctcatgagctctagtttagtattgtgtttgttttgaattatgattgagataaaggatatttacttctcagGTGATTTAATCAAAGCCTCTGGAGAAGATCTGTAGGTACGTACAAATGTCTGAACATGTTATGGTTTTGGGTAAAGGTAACAAAGGAATCAGCAAGAATT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G16365.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116465043|gb|EG507635.1|EG507635EST: TTCTTTGGACAGTGTACCTCCACGTATTCGTCTCTG GTGATTTAATCAAAGCCTCTGGAGAAGATCTGTAGGTACGTACAAATGTCT
genomic: TTCTTTGGACAGTGTACCTCCACGTATTCGTCTCTGgtaataatct ... tacttctcagGTGATTTAATCAAAGCCTCTGGAGAAGATCTGTAGGTACGTACAAATGTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagtattgtgtttgttttgaattatgattgagataaaggatatttacttctcagGTGATTTAATCAAAGCCTCTGGAGAAGATCTGTAGGTACGTACAAATGTCTGAACATGTTATGGTTTTGGGTAAAGGTAACAAAGGAATCAGCAAGAATT
tttacttctc CT-rich tract
tttgttttgaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agatcatagtaattatccacttgcttgatgctcatgagctctagtttagtattgtgtttgttttgaattatgattgagataaaggatatttacttctcagGTGATTTAATCAAAGCCTCTGGAGAAGATCTGTAGGTACGTACAAATGTCTGAACATGTTATGGTTTTGGGTAAAGGTAACAAAGGAATCAGCAAGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA