Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaatttttttacttttctttgtttgtttgattttactttggttttgacgatgaatttttgaaaagatgatgatggaaagacgatgaaaaagaagctgaaacaatgggctaaggtggtcgcatgttccacgaggcagtcctccggtaaaccaaattgatgaaagtgataatcttctaatttttttctagTTATGTCCGAAGAATGGCATTTTTGTAATATAATTGTTAAAAGGCTATTTCAATTAATGTTTCTGTATTTGACTGTTAGTCAAGTGAGGTTTGTGAAGTA

Basic information

species Arabidopsis thaliana
transcript AT2G15610.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtcctccggtaaaccaaattgatgaaagtgataatcttctaatttttttctagTTATGTCCGAAGAATGGCATTTTTGTAATATAATTGTTAAAAGGCTATTTCAATTAATGTTTCTGTATTTGACTGTTAGTCAAGTGAGGTTTGTGAAGTA
                                      ttctaat  putative branch site (score: 2)
                                    tcttctaatttttttc  CT-rich tract
                                ataatcttctaatttt  TA-rich tract