Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtacatattacatggtcatatatgcatatggctacatgtttgagttatattcgattatctggtgaaagatgagattgtgagtttgtaagtttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAAC

Basic information

species Arabidopsis thaliana
transcript AT2G13360.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054106|gb|DR349863.1|DR349863
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054077|gb|DR349834.1|DR349834
EST:     TTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGARAAGAGGAAAAAATGGACTATATGTATGGA
genomic: TTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054061|gb|DR349818.1|DR349818
EST:     CCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054121|gb|DR349878.1|DR349878
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054128|gb|DR349885.1|DR349885
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054086|gb|DR349843.1|DR349843
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054075|gb|DR349832.1|DR349832
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054090|gb|DR349847.1|DR349847
EST:     AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054072|gb|DR349829.1|DR349829
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054065|gb|DR349822.1|DR349822
EST:     AGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054085|gb|DR349842.1|DR349842
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054081|gb|DR349838.1|DR349838
EST:     AGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054133|gb|DR349890.1|DR349890
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054156|gb|DR349913.1|DR349913
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054107|gb|DR349864.1|DR349864
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054097|gb|DR349854.1|DR349854
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054080|gb|DR349837.1|DR349837
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054064|gb|DR349821.1|DR349821
EST:     CTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054108|gb|DR349865.1|DR349865
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|301502319|gb|HO207859.1|HO207859
EST:     GCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: GCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054076|gb|DR349833.1|DR349833
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054119|gb|DR349876.1|DR349876
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054131|gb|DR349888.1|DR349888
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054122|gb|DR349879.1|DR349879
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054137|gb|DR349894.1|DR349894
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054124|gb|DR349881.1|DR349881
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCANAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054138|gb|DR349895.1|DR349895
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054089|gb|DR349846.1|DR349846
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCATAG                         TTTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054087|gb|DR349844.1|DR349844
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAK                         TGTAGAGGAGGATCCAAAAGAAAAGMGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054079|gb|DR349836.1|DR349836
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054127|gb|DR349884.1|DR349884
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054098|gb|DR349855.1|DR349855
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054071|gb|DR349828.1|DR349828
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054132|gb|DR349889.1|DR349889
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGNAGAGGAGGATCCNAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054117|gb|DR349874.1|DR349874
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054148|gb|DR349905.1|DR349905
EST:     CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054126|gb|DR349883.1|DR349883
EST:     AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054074|gb|DR349831.1|DR349831
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054082|gb|DR349839.1|DR349839
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGM
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054116|gb|DR349873.1|DR349873
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054114|gb|DR349871.1|DR349871
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054146|gb|DR349903.1|DR349903
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054140|gb|DR349897.1|DR349897
EST:     AGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054070|gb|DR349827.1|DR349827
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054143|gb|DR349900.1|DR349900
EST:     AGGAGTTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054091|gb|DR349848.1|DR349848
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054059|gb|DR349816.1|DR349816
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054062|gb|DR349819.1|DR349819
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054152|gb|DR349909.1|DR349909
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054067|gb|DR349824.1|DR349824
EST:     GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054099|gb|DR349856.1|DR349856
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054088|gb|DR349845.1|DR349845
EST:     AACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054105|gb|DR349862.1|DR349862
EST:     CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAA
genomic: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAA
EST: gi|86054102|gb|DR349859.1|DR349859
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054142|gb|DR349899.1|DR349899
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054150|gb|DR349907.1|DR349907
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054063|gb|DR349820.1|DR349820
EST:     AGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054139|gb|DR349896.1|DR349896
EST:     AAAACCTCGCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTC-CCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054115|gb|DR349872.1|DR349872
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054144|gb|DR349901.1|DR349901
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054103|gb|DR349860.1|DR349860
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054068|gb|DR349825.1|DR349825
EST:     TCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: TCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054135|gb|DR349892.1|DR349892
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054129|gb|DR349886.1|DR349886
EST:     CTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054113|gb|DR349870.1|DR349870
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAATGAGGAAAAAATGGACTATATGTATGG
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAA-GAGGAAAAAATGGACTATATGTATGG
EST: gi|86054058|gb|DR349815.1|DR349815
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054134|gb|DR349891.1|DR349891
EST:     GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|124995933|gb|EL068202.1|EL068202
EST:     GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATA
genomic: GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATA
EST: gi|86054093|gb|DR349850.1|DR349850
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054136|gb|DR349893.1|DR349893
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054104|gb|DR349861.1|DR349861
EST:     AAAACCCCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054120|gb|DR349877.1|DR349877
EST:     AAAACCTCCCTCAGGAGCTTCAGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054149|gb|DR349906.1|DR349906
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054092|gb|DR349849.1|DR349849
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054066|gb|DR349823.1|DR349823
EST:     CTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|301503194|gb|HO208734.1|HO208734
EST:     CCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054094|gb|DR349851.1|DR349851
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054154|gb|DR349911.1|DR349911
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|125234224|gb|EL248309.1|EL248309
EST:     AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATC
genomic: AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATC
EST: gi|86054100|gb|DR349857.1|DR349857
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054153|gb|DR349910.1|DR349910
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054155|gb|DR349912.1|DR349912
EST:     AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054147|gb|DR349904.1|DR349904
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054073|gb|DR349830.1|DR349830
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054084|gb|DR349841.1|DR349841
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054145|gb|DR349902.1|DR349902
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|125208022|gb|EL222976.1|EL222976
EST:     CGAAGGAGTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CGAAGGAGTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054083|gb|DR349840.1|DR349840
EST:     CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054112|gb|DR349869.1|DR349869
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054130|gb|DR349887.1|DR349887
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054151|gb|DR349908.1|DR349908
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054141|gb|DR349898.1|DR349898
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054123|gb|DR349880.1|DR349880
EST:     AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
EST: gi|86054060|gb|DR349817.1|DR349817
EST:     CCTCCCTCAGGAGCTTCCGCCTTATTCAGAG                         TGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGgttaaacttc ... tttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatattcgattatctggtgaaagatgagattgtgagtttgtaagtttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAAC
                                             ttttt  CT-rich tract
                                         taagttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtacatattacatggtcatatatgcatatggctacatgtttgagttatattcgattatctggtgaaagatgagattgtgagtttgtaagtttttgacagTGTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAAC

- - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtttgt