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gtatgacttcaaaaaaaattagggttcatataagctttgtattgagtgagtcaatctttgaattgtagTTTGAGAAAGCAGCTGGTGAAGTGTTGACTGGATTGAAAATGAGGGAGGCTAATGAGGGAGGGGTAATGGAGGAACCTCTGACTAGAGATGTGCAGATTT
species | Arabidopsis thaliana |
transcript | AT2G07690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGATCTCCCCTCCTTAATCCGATCTGCTCCTGCCGATTATCTCCCTGTG TTTGAGAAAGCAGCTGGTGAAGTGTTGACTGGATTGAAAATGAGGGAGGCTEST: gi|116420153|gb|EG462745.1|EG462745
genomic: CCGATCTCCCCTCCTTAATCCGATCTGCTCCTGCCGATTATCTCCCTGTGgtatgacttc ... tgaattgtagTTTGAGAAAGCAGCTGGTGAAGTGTTGACTGGATTGAAAATGAGGGAGGCT
EST: CCGATCTCCCCTCCTTAATCCGATCTGCTCCTGCCGATTATCTCCCTGTG TTTGAGAAAGCAGCTGGTGAAGTGTTGACTGGATTGAAAATGAGGGAGGCT
genomic: CCGATCTCCCCTCCTTAATCCGATCTGCTCCTGCCGATTATCTCCCTGTGgtatgacttc ... tgaattgtagTTTGAGAAAGCAGCTGGTGAAGTGTTGACTGGATTGAAAATGAGGGAGGCT
aaaaattagggttcatataagctttgtattgagtgagtcaatctttgaattgtagTTTGAGAAAGCAGCTGGTGAAGTGTTGACTGGATTGAAAATGAGGGAGGCTAATGAGGGAGGGGTAATGGAGGAACCTCTGACTAGAGATGTGCAGATTT
tcttt CT-rich tract
ttcatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacttcaaaaaaaattagggttcatataagctttgtattgagtgagtcaatctttgaattgtagTTTGAGAAAGCAGCTGGTGAAGTGTTGACTGGATTGAAAATGAGGGAGGCTAATGAGGGAGGGGTAATGGAGGAACCTCTGACTAGAGATGTGCAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT