1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gccttgagtctaaaaccctatctggaacaaaattgggggtttctgattataatgttatcaatctgttgctgaaagtgtttgcctttttgttttggataagTCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAGAGGATAAAGGAAATGTTCTTAGAATCAAGGAATGGGAAGTAGAGATGTATCAGGAGG
species | Arabidopsis thaliana |
transcript | AT2G04400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAGATAAACTTTAGGGCTCCGTCGCAATTCTCGATCCGAGCTCAACAG TCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAGAGGATAAA
genomic: GGAAGATAAACTTTAGGGCTCCGTCGCAATTCTCGATCCGAGCTCAACAGgtgcgaccaa ... tttggataagTCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAGAGGATAAA
attataatgttatcaatctgttgctgaaagtgtttgcctttttgttttggataagTCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAGAGGATAAAGGAAATGTTCTTAGAATCAAGGAATGGGAAGTAGAGATGTATCAGGAGG
ttctgat putative branch site (score: 3)
tttgcctttttgtttt putative PPT
tttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttgagtctaaaaccctatctggaacaaaattgggggtttctgattataatgttatcaatctgttgctgaaagtgtttgcctttttgttttggataagTCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAGAGGATAAAGGAAATGTTCTTAGAATCAAGGAATGGGAAGTAGAGATGTATCAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - -ctaaaac
- - - - - - - - -ctatctg
- - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaaag