1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggtaacccaattccaaaaaacgtttcttttttctcgatgccttagcttctttggattctgttgtgatctaccgattttgaatttgcttgatcgatcatcggatcactgtgattagtgttattgttcctttcctttgtgtagCTTTCGCGCTTATGGAAGATTCTGGAGTGAATCCAATGGATTCACCATCTAAAGGCAGTGACTTTGGAGTCTATGGAATCATAGGAGGTGGAATCGTGGC
species | Arabidopsis thaliana |
transcript | AT2G04350.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068817|gb|DR364574.1|DR364574
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068817|gb|DR364574.1|DR364574
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068817|gb|DR364574.1|DR364574
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068817|gb|DR364574.1|DR364574
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068822|gb|DR364579.1|DR364579
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068822|gb|DR364579.1|DR364579
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068822|gb|DR364579.1|DR364579
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068822|gb|DR364579.1|DR364579
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068822|gb|DR364579.1|DR364579
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068807|gb|DR364564.1|DR364564
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068807|gb|DR364564.1|DR364564
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068807|gb|DR364564.1|DR364564
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068807|gb|DR364564.1|DR364564
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068807|gb|DR364564.1|DR364564
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068810|gb|DR364567.1|DR364567
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068810|gb|DR364567.1|DR364567
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068810|gb|DR364567.1|DR364567
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068810|gb|DR364567.1|DR364567
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068810|gb|DR364567.1|DR364567
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068816|gb|DR364573.1|DR364573
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068816|gb|DR364573.1|DR364573
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068816|gb|DR364573.1|DR364573
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068816|gb|DR364573.1|DR364573
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068816|gb|DR364573.1|DR364573
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068820|gb|DR364577.1|DR364577
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068820|gb|DR364577.1|DR364577
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068820|gb|DR364577.1|DR364577
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068820|gb|DR364577.1|DR364577
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC GEST: gi|86068820|gb|DR364577.1|DR364577
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
EST: TTCGAAGAAATCATCAAGAAGCTTCCTTTCACTGATTTCTCAATCTATTC G
genomic: TTCGAAGAAATCATCAAGAAGTTTCCTTTCACTGATTTCTCAATCTATTCgtaggtaacc ... ctttgtgtag-
ttgatcgatcatcggatcactgtgattagtgttattgttcctttcctttgtgtagCTTTCGCGCTTATGGAAGATTCTGGAGTGAATCCAATGGATTCACCATCTAAAGGCAGTGACTTTGGAGTCTATGGAATCATAGGAGGTGGAATCGTGGC
gcttgat putative branch site (score: 5)
ttattgttcctttcct putative PPT
ttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtaacccaattccaaaaaacgtttcttttttctcgatgccttagcttctttggattctgttgtgatctaccgattttgaatttgcttgatcgatcatcggatcactgtgattagtgttattgttcctttcctttgtgtagCTTTCGCGCTTATGGAAGATTCTGGAGTGAATCCAATGGATTCACCATCTAAAGGCAGTGACTTTGGAGTCTATGGAATCATAGGAGGTGGAATCGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA