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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgtttatctcccgatctgattttctgtctctctaacgttgttgttgattgatcatgagattttgcatttacccaattcgtttcagGAACTGATTTGGCGAGTTTGATGATAAAGTTTGTATTTTTCTTTGTGGGTTGATTTCAAATTGTGAGAAAGATTCAAGATTTTTTGTCGTCTCAATGATG

Basic information

species Arabidopsis thaliana
transcript AT2G04305.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125215078|gb|EL229280.1|EL229280
EST:     GAAGCAAATTCTCAGCTTCTTCCGATGATCTAGCTTCACTTAGATCTCAT                         GAACTGATTTGGCGAGTTTGA
genomic: GAAGCAAATTCTCAGCTTCTTCCGATGATCTAGCTTCACTTAGATCTCATgtaagtttgt ... ttcgtttcagGAACTGATTTGGCGAGTTTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaacgttgttgttgattgatcatgagattttgcatttacccaattcgtttcagGAACTGATTTGGCGAGTTTGATGATAAAGTTTGTATTTTTCTTTGTGGGTTGATTTCAAATTGTGAGAAAGATTCAAGATTTTTTGTCGTCTCAATGATG
                                             ttcgtttc  CT-rich tract
                          agatttt  TA-rich tract