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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctctttcaagaaacctagtcaatagggaaatttaatggaatataaggtttgagttttatagagatcttcttgtatcagcatgtgtcttgtgttaatgttctaaagaacctttcttaagacaactagcttcatttttatcacgagagatcaatgatatgataacagaagaatctcacttctttactttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAACAATCACTTGTATGCTCTTGGCTCTGCTCTTCTTAGGGACATGGCCAGCA

Basic information

species Arabidopsis thaliana
transcript AT2G03600.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437752|gb|EG480344.1|EG480344
EST:     TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAG                         TGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
genomic: TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAGgtaatctctt ... tttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
EST: gi|116437751|gb|EG480343.1|EG480343
EST:     TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAG                         TGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
genomic: TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAGgtaatctctt ... tttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
EST: gi|116437788|gb|EG480380.1|EG480380
EST:     TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAG                         TGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC
genomic: TGTTCTCTGGTCTTCCTCAAAGTCAAAGTTAAGACAAAAGCTTTAATAAGgtaatctctt ... tttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgagagatcaatgatatgataacagaagaatctcacttctttactttgatgcagTGGGATTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAACAATCACTTGTATGCTCTTGGCTCTGCTCTTCTTAGGGACATGGCCAGCA
                               tctcacttctttactt  CT-rich tract
              atatgataa  TA-rich tract