1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggtttctctagggtttaggcttgatgggtgtgattgattgtttttgattatggtgtaaagattcaaaactgagtggtttttgtttttgttttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAGCATGTATCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAA
species | Arabidopsis thaliana |
transcript | AT2G03120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTGAGAGATTTGCTAATCTCGCTCTCGCAG GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTAEST: gi|86050554|gb|DR346309.1|DR346309
genomic: TGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTAEST: gi|86050548|gb|DR346303.1|DR346303
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCNRGTTTGAATGTTAEST: gi|86050557|gb|DR346312.1|DR346312
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTAEST: gi|86050552|gb|DR346307.1|DR346307
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTTCTAATCTCGCTCTCGSAG GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTTAATGTTAEST: gi|86050546|gb|DR346301.1|DR346301
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG GTTTGACATTGGCACCACTEST: gi|125327433|gb|EL341513.1|EL341513
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACT
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG GTTTGACATTGGEST: gi|86050551|gb|DR346306.1|DR346306
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGG
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTVATCTCGCTCTCGCAG GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTAEST: gi|86050547|gb|DR346302.1|DR346302
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTAEST: gi|86050549|gb|DR346304.1|DR346304
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
EST: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
genomic: AGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAGgtttttctct ... ttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTA
gattatggtgtaaagattcaaaactgagtggtttttgtttttgttttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAGCATGTATCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAA
ttttgat putative branch site (score: 4)
tttttgtttttgtttt putative PPT
tttttgtttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttctctagggtttaggcttgatgggtgtgattgattgtttttgattatggtgtaaagattcaaaactgagtggtttttgtttttgttttggttacagGTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAGCATGTATCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAA
- - - - - -ggtttag
- - - - - - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaaac