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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttcatcatcatctaattcttaaaccatttggtctatattgagcaatggctttgttctagaataattgactgttgacgaattttttgttatgtttttgaccagTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAG

Basic information

species Arabidopsis thaliana
transcript AT2G02960.5
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02960.4 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G35750.2 (Glycine max), 3'ss of exon 1
gttagttttcatcatcatctaattcttaaaccatttggtctatattgagcaatggctttgttctagaataattgactgttgacgaattttttgttatgtttttgaccagTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAG
     |||   |       |  || ||      |||    | || |  ||      ||   | | |  | |  || || |||    |||||||  |  ||  ||| ||||||||||||||||| || |||||||||||||||||||| || ||| |||| || || ||||| |||||  ||
-----tttatgtggcatctttgttttttttttttttttcttttaatatgcttgcatttccattttgtgttaacgattggtga----ttttttggaaatttcatgaacagTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAG

upper sequence: AT2G02960.4 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G04870.1 (Glycine max), 3'ss of exon 1
gttagttttcatcatcatctaattcttaaaccatttggtctatattgagcaatggctttgttctagaataattgactgttgacgaattttttgttatgtttttgaccagTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAG
         |||| |  | |  || ||    | |||  |  ||  |          | | || |    ||||  |   ||   |  ||||| |  || |||  |  ||||||||||||||||| || |||||||||||||||||||| || ||| |||| |  || ||||| |||||| ||
-----gagacatctttgttttttttttttttcctttaat--atgcttgcttgcatttctattttgtgttaat-aatgatttgtggttttttggaaat-tttacgtacagTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAG

upper sequence: AT2G02960.4 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv01s0026g02470.t01 (Vitis vinifera), 3'ss of exon 4
gttagttttcatcatcatctaattcttaa-accatttggtctatattgagcaatggctttgttct-agaataattgactgttgacgaattttttgttatgtttttgaccagTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAG
 |   || |||| || |  |||   |||  ||   ||| |  || ||   |  |  ||   || | ||   ||||   | |||||        |||    |||||  ||||||||||||||| || |||||||| || ||||||||||| || ||| |||| || || ||||| || || |||
-tgtattgtcattatgagataaaatttagtactccttgat--atttttctctctaactccattgtcagtcaaatttgttattgac--------tgtatattttttttccagTATGCTCATAGGAAGTGTGTTCAACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgttctagaataattgactgttgacgaattttttgttatgtttttgaccagTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAG
                      tgttgac  putative branch site (score: 3)
                                          tgttttt  putative PPT
                              aattttttgttatgtt  TA-rich tract