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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttaaatatctgtttgctggaagtattttgattttcttgttgctgaagaacccttttgagttttatctaacagtgttgcatttggttggttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTG

Basic information

species Arabidopsis thaliana
transcript AT2G02860.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02860.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G40980.1 (Glycine max), 3'ss of exon 1
--ttgttaaatatctgtttgctggaagtattttgattttcttgttgctgaagaacccttttgagttttatctaacagtgttgc-atttggttggttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTG
  ||||| | | |    | |||| | |  | |   | |   | | ||   | |      ||     ||| |||   |  |||   ||| |||  ||| |||||||  | ||||||   ||||| |||||||||||||||||||| || ||||| |||||||| ||||||
aattgttgagtttgcaat-gctgaaggggtgtgtttgtgtctatagcgttatatttagctttccgattaactatgtgctttgttgtttcgtt--ttggtgcagACGTTGGGAATAGGACATGCGTTTTCTTCGTTTATTTGGCTCTGTGGCCCCATTACAGGTCTTGTG

upper sequence: AT2G02860.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA18G15950.1 (Glycine max), 3'ss of exon 1
ttgttaaatatctgtttgctggaagtattttgattttcttgt--tgctgaagaacccttttgagttttatctaacagtgttgcatttggttggttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTG
 | |  ||| |        ||  ||  |  |  | |   ||   || | |    |   |||  | || |        |     |||  |||  ||| |||||||  | ||||||   ||||| |||||||||||||||||||| || ||||| |||||||| ||||||
atttgcaatgttgaaggagtgagagagtgcttgtgtgtgtgcagtgtttatattcaactttccgattaactgtgtgcttagttattgcgtt--ttggtgcagACGTTGGGAATAGGACATGCGTTTTCTTCGTTTATTTGGCTCTGTGGCCCCATTACAGGTCTTGTG

upper sequence: AT2G02860.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0026g01960.t01 (Vitis vinifera), 3'ss of exon 1
-ttgttaaatatctgtttgctggaagtattttga--ttttcttgttgctgaagaacccttttgagttttatctaacagtgttgcatttggttggttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTG
  |||    |   | |   |     || |||  |  |||| ||||   |  | ||   | ||   ||| ||  |  |   || ||||||  |   |||||||||| |||||||||  |||||| |||||||| ||||| ||||| || ||||| |||||||||||||||
tctgtcctttccatatcaac-aattgtgtttaaagtttttattgtgcttatacaaatttctta--tttgattaattatgttttcatttgaataactgatgcagACACTTGGAATAGAGCATGCCTTTTCTTCATTTATCTGGCTTTGTGGCCCTATTACAGGCCTTGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439432|gb|EG482024.1|EG482024
EST:     TTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAG                         ACCCTTGGAATATCGCATGCTTTCTCTTCGTTTATTTGGCTGTGCGGCCCA
genomic: TTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAGgtacttacta ... gttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCA
EST: gi|116439431|gb|EG482023.1|EG482023
EST:     TTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAG                         ACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCA
genomic: TTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCAGgtacttacta ... gttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagaacccttttgagttttatctaacagtgttgcatttggttggttgatgcagACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTG
                 ttttatctaa  TA-rich tract