1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtaaaattgttaggtcatatcgattctcgtcgtcttcattgctcgattcagcttgttgttgcgaaatagttgctacagagtcattgattcgtttctattcgcaatctgtggtttgaatttctatagacatagctgccggaatttgttcttggtacatggactaatgaaattcgtttatctgattagGTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAA
species | Arabidopsis thaliana |
transcript | AT2G02810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGGTATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGACTCT GTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTEST: gi|86041457|gb|DR337212.1|DR337212
genomic: TCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGACTCTgtaagtaaaa ... atctgattagGTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATT
EST: TCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGACTCT GTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGSATT
genomic: TCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGACTCTgtaagtaaaa ... atctgattagGTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATT
gctgccggaatttgttcttggtacatggactaatgaaattcgtttatctgattagGTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAA
gactaat putative branch site (score: 2)
tttatct putative PPT
taatgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaaattgttaggtcatatcgattctcgtcgtcttcattgctcgattcagcttgttgttgcgaaatagttgctacagagtcattgattcgtttctattcgcaatctgtggtttgaatttctatagacatagctgccggaatttgttcttggtacatggactaatgaaattcgtttatctgattagGTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA