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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtttttaaagttatgcgttttacttgtttgatgaaattcctcagagagcgtttgaatcagtcagaatcttatcctatagcttaatgaacgttctaagtattgatttaagcattgttgtattgcagGATTAGAGGATTGGGAACAGTGTGAAGCGAGTGAGTCCGAGAAGCTGAAAGCTACGGAAGCTATTAACAATGTGTTATCTATCTTAGTGCATTACAGCGA

Basic information

species Arabidopsis thaliana
transcript AT2G02710.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125193048|gb|EL208002.1|EL208002
EST:     CGTGTGTCAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAG                         GATTAGAGGATTGGGAACA
genomic: CGTGTGTCAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAGgtttggtttt ... tgtattgcagGATTAGAGGATTGGGAACA
EST: gi|124788482|gb|EH878161.1|EH878161
EST:     CAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAG                         GATTAGAGGATTGGGAACAGTG
genomic: CAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAGgtttggtttt ... tgtattgcagGATTAGAGGATTGGGAACAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctatagcttaatgaacgttctaagtattgatttaagcattgttgtattgcagGATTAGAGGATTGGGAACAGTGTGAAGCGAGTGAGTCCGAGAAGCTGAAAGCTACGGAAGCTATTAACAATGTGTTATCTATCTTAGTGCATTACAGCGA
                           tattgat  putative branch site (score: 3)
                       taagtattgatttaa  TA-rich tract