1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaatcaatttacaaaaatatttcacgcttataatatcgacatgaacaaaccagtgttaataaaattttgtttatgtaatgtaaaactgaaaaattggcagATGGGAGTTGTGGGAGAGAAATTAGACATAGATTTTGTGATATCAGTAGGAGATAATTTCTACGACGACGGATTAAAAGGAGTCAATGATCCTTCCTTTG
species | Arabidopsis thaliana |
transcript | AT2G01880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGATTGGGGACGCAAAGGTGGTTTTAATCAATCTCTCGTTGCACATCAG ATGGGAGTTGTGGGAGAGAAATTAGACATAGATTTTGTGATATCAGTAGGA
genomic: GAGATTGGGGACGCAAAGGTGGTTTTAATCAATCTCTCGTTGCACATCAGgttagtaata ... aaattggcagATGGGAGTTGTGGGAGAGAAATTAGACATAGATTTTGTGATATCAGTAGGA
caaaccagtgttaataaaattttgtttatgtaatgtaaaactgaaaaattggcagATGGGAGTTGTGGGAGAGAAATTAGACATAGATTTTGTGATATCAGTAGGAGATAATTTCTACGACGACGGATTAAAAGGAGTCAATGATCCTTCCTTTG
tgttaat putative branch site (score: 3)
ttaataaaattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcaatttacaaaaatatttcacgcttataatatcgacatgaacaaaccagtgttaataaaattttgtttatgtaatgtaaaactgaaaaattggcagATGGGAGTTGTGGGAGAGAAATTAGACATAGATTTTGTGATATCAGTAGGAGATAATTTCTACGACGACGGATTAAAAGGAGTCAATGATCCTTCCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
aaatcaa
- - - - - -caaaaat
- - - - - - - - - - - - - - - - - - - acatgaa
- - - - - - - - - - - - - - - - - - - - - - -caaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaac