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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcacatttcttctccttttgcatgtttcgattgcgcgtatattagtctttccaatttcacgttaatagccgaatcagaattggttgattatgtgattctcagGTGAGGTTTTTGTTGAAAAATGTATCCGGAGAAGCAAAACCTGGGAGGTTGCTAGCGATTATGGGTCCTTCTGGTTCTGGGAAAACAACATTGCTCAATG

Basic information

species Arabidopsis thaliana
transcript AT2G01320.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124783559|gb|EH873395.1|EH873395
EST:     TCCGTTGGAGGAAAATCACCTGCTCGCTCTCCGATAAGTCCTCCAAATCG                         GTGAGGTTTTTGTTGAAAAATGTATCCGGAGAAGCA
genomic: TCCGTTGGAGGAACATCACCTGCTCGCTCTCCGATAAGTCCTCCAAATCGgtgagcacat ... tgattctcagGTGAGGTTTTTGTTGAAAAATGTATCCGGAGAAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccaatttcacgttaatagccgaatcagaattggttgattatgtgattctcagGTGAGGTTTTTGTTGAAAAATGTATCCGGAGAAGCAAAACCTGGGAGGTTGCTAGCGATTATGGGTCCTTCTGGTTCTGGGAAAACAACATTGCTCAATG
                                                ttctc  CT-rich tract
                                    ttgattat  TA-rich tract