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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagacaattctattaatcggttgagtggtattagtatagtactcatgttttcttagttttcattttctaaattaatgtaactaattagGAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCAGCGGCTAAAGCCAAGGTCAAGCGCGTGGTTTTCACGTCATCAATTGGTG

Basic information

species Arabidopsis thaliana
transcript AT1G80820.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86031986|gb|DR327739.1|DR327739
EST:     ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCC                         GAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA
genomic: ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCCgtaagtagac ... aactaattagGAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA
EST: gi|86031984|gb|DR327737.1|DR327737
EST:     ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCC                         GAGACAATGTTGGAGCCGGCGGTGAACGGAGC
genomic: ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCCgtaagtagac ... aactaattagGAGACAATGTTGGAGCCGGCGGTGAACGGAGC
EST: gi|19874687|gb|AU235518.1|AU235518
EST:     ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCC                         GAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA
genomic: ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCCgtaagtagac ... aactaattagGAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA
EST: gi|301503188|gb|HO208728.1|HO208728
EST:     ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCC                         GAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA
genomic: ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCCgtaagtagac ... aactaattagGAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA
EST: gi|86031985|gb|DR327738.1|DR327738
EST:     ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCC                         GAGACAATGTTGGAGCCGGCG-TGAACGGAGCCAAGTTCGTGATTGACGCA
genomic: ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCCgtaagtagac ... aactaattagGAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA
EST: gi|86031983|gb|DR327736.1|DR327736
EST:     ACGGTTGCGATGGCGTTTTCCACAMTGCCTCTCCGATGACCGACGATCCC                         GAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA
genomic: ACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCCgtaagtagac ... aactaattagGAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatagtactcatgttttcttagttttcattttctaaattaatgtaactaattagGAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCAGCGGCTAAAGCCAAGGTCAAGCGCGTGGTTTTCACGTCATCAATTGGTG
                   ttagttttcattttct  TA-rich tract