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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctcttttattctgataaaagcttttagagaaggattacttatgtgattctgtctcttgaattgaacttttaacagTTAATCAGACCTCGCGCTCGTGATAATGGCAACTTTTGGTGCGCCTGCTACCGCCAACAGTAACCCTAACAAATCCTACGAG

Basic information

species Arabidopsis thaliana
transcript AT1G80670.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458586|gb|EG501178.1|EG501178
EST:     TTCTGCTTACCGCAAAAGTCTATATCTCCGACGGACCTTCTTCTCTCTAG                         TTAATCAGACCTCGCGCTCGTGATAATGGCAACTTTTGGTGCGCCTGCTAC
genomic: TTCTGCTTACCGGAAAAGTCTATATCTCCGACGGACCTTCTTCTCTCTAGgtttgtctct ... cttttaacagTTAATCAGACCTCGCGCTCGTGATAATGGCAACTTTTGGTGCGCCTGCTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttagagaaggattacttatgtgattctgtctcttgaattgaacttttaacagTTAATCAGACCTCGCGCTCGTGATAATGGCAACTTTTGGTGCGCCTGCTACCGCCAACAGTAACCCTAACAAATCCTACGAG
                                             ctttt  CT-rich tract
                                      aattgaacttttaa  TA-rich tract