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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagtggcctcagatccagcttttcatgttattgataattttgtatccttgaagctttttggatgttgtgagattataacagagcttttcctttcagcagAATAGAATCTCTCAGTTTAAAGGCTCCAAAGATGGCGGCGTCAGAAGAGAATAGCGCATTGTTTCCCATTTTTATCTTGACGATTATGGCAATTCCTTTG

Basic information

species Arabidopsis thaliana
transcript AT1G79940.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415762|gb|EG458354.1|EG458354
EST:     ATCCTAGGTGAGCTTCTTCTTCGATTTCCTCTTCTACAATATCCTTTCAA                         AATAGAATCTCTCAGTTTAAAGGCTCCAAAGATGGCGGCGTCAGAAGAGAA
genomic: ATCCTAGGTGAGCTTCTTCTTCGATTTCCTCTTCTACAATATCCTTTCAAgttcgatttc ... ctttcagcagAATAGAATCTCTCAGTTTAAAGGCTCCAAAGATGGCGGCGTCAGAAGAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttgaagctttttggatgttgtgagattataacagagcttttcctttcagcagAATAGAATCTCTCAGTTTAAAGGCTCCAAAGATGGCGGCGTCAGAAGAGAATAGCGCATTGTTTCCCATTTTTATCTTGACGATTATGGCAATTCCTTTG
                            ttataac  putative branch site (score: 2)
                                       cttttcctttcagc  putative PPT
                         agattataa  TA-rich tract