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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtgttaacaccaattagtcttctcctagtctgctttcattgatattccatccttgttcatctgatacttattttttttgcttttattgatctgagaagGTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTGACAATGAGTGTAGTCGGGTTTGATTTTGGAAACGAGAATTGCCTTGTTG

Basic information

species Arabidopsis thaliana
transcript AT1G79930.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116479113|gb|EG521705.1|EG521705
EST:     CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAG                         GTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
genomic: CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAGgtatgtttcc ... atctgagaagGTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
EST: gi|86068010|gb|DR363767.1|DR363767
EST:     CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAG                         GCTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
genomic: CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAGgtatgtttcc ... atctgagaagGTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
EST: gi|86068009|gb|DR363766.1|DR363766
EST:     CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAG                         GTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
genomic: CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAGgtatgtttcc ... atctgagaagGTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
EST: gi|86068008|gb|DR363765.1|DR363765
EST:     CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAG                         GTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
genomic: CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAGgtatgtttcc ... atctgagaagGTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
EST: gi|116479116|gb|EG521708.1|EG521708
EST:     CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAG                         GTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG
genomic: CCAGATTTGGGTTCAAGCTTCCATAACTTTAAACCCCTCTCGCGATCCAGgtatgtttcc ... atctgagaagGTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccatccttgttcatctgatacttattttttttgcttttattgatctgagaagGTTGCTATCAAATACTTGGGAGCCCCCAGTATTATTGAATAACACAGCCTGACAATGAGTGTAGTCGGGTTTGATTTTGGAAACGAGAATTGCCTTGTTG
                                        tattgat  putative branch site (score: 3)
                    atacttattttttttg  TA-rich tract