1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tggcaatacatttggagttgtttgtttttttatttaagtttttccaggaactttgcaagaaaacaatcgtatttattatcttttgtcacaaatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA
species | Arabidopsis thaliana |
transcript | AT1G79530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCCTCGCCCTGACTTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAG GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTEST: gi|86039045|gb|DR334800.1|DR334800
genomic: CGCTCCTCGCCCTGAC-TTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGgtcagagacg ... aatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
EST: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAG GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTEST: gi|86039046|gb|DR334801.1|DR334801
genomic: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGgtcagagacg ... aatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
EST: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAG GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTEST: gi|86039047|gb|DR334802.1|DR334802
genomic: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGgtcagagacg ... aatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
EST: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAG GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTEST: gi|86039050|gb|DR334805.1|DR334805
genomic: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGgtcagagacg ... aatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
EST: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAG GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTEST: gi|86039044|gb|DR334799.1|DR334799
genomic: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGgtcagagacg ... aatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
EST: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAG GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTEST: gi|86039051|gb|DR334806.1|DR334806
genomic: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGgtcagagacg ... aatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
EST: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAG GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTEST: gi|86039048|gb|DR334803.1|DR334803
genomic: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGgtcagagacg ... aatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
EST: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAG GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
genomic: CCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGgtcagagacg ... aatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCT
aggaactttgcaagaaaacaatcgtatttattatcttttgtcacaaatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA
tttctc CT-rich tract
tatttattatcttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcaatacatttggagttgtttgtttttttatttaagtttttccaggaactttgcaagaaaacaatcgtatttattatcttttgtcacaaatttctcagGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -caataca
- - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - caggaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa