1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggtttcttttcatttaagtttgaacattgttgatgaagaacagatttagcttccacgtttctaaatttccagagatgacactatttcgcattttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAG
species | Arabidopsis thaliana |
transcript | AT1G79210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCTTGCGACCATTCCGTTGTTCGATCCATATATCAAAG CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCAEST: gi|86065884|gb|DR361641.1|DR361641
genomic: CTTCTCTTGCGACCATTCC---GTTCGATCCATATATCAAAGgtatgttgct ... ttttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
EST: TGCGACCATTCCGTTGTTCGATCCATATATCAAAG CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCAEST: gi|86065879|gb|DR361636.1|DR361636
genomic: TGCGACCATTCC---GTTCGATCCATATATCAAAGgtatgttgct ... ttttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
EST: CTTCTCTTGCGACCATTCCGTTGTTCGATCCATATATCAAAG CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCAEST: gi|47831532|gb|CK121216.1|CK121216
genomic: CTTCTCTTGCGACCATTCC---GTTCGATCCATATATCAAAGgtatgttgct ... ttttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
EST: GTTCGATCCATATATCAAAG CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCAEST: gi|86065878|gb|DR361635.1|DR361635
genomic: GTTCGATCCATATATCAAAGgtatgttgct ... ttttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
EST: CTTCTCTTGCGACCATTCCGTTGTTCGATCCATATATCAAAG CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCAEST: gi|86065891|gb|DR361648.1|DR361648
genomic: CTTCTCTTGCGACCATTCC---GTTCGATCCATATATCAAAGgtatgttgct ... ttttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
EST: TGCGACCATTCCGTTGTTCGATCCATATATCAAAG CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCAEST: gi|86065890|gb|DR361647.1|DR361647
genomic: TGCGACCATTCC---GTTCGATCCATATATCAAAGgtatgttgct ... ttttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
EST: GCGACCATTCCGTTGTTCGATCCATATATCAAAG CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCAEST: gi|86065889|gb|DR361646.1|DR361646
genomic: GCGACCATTCC---GTTCGATCCATATATCAAAGgtatgttgct ... ttttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
EST: CTTCTCTTGCGACCATTCCGTTGTTCGATCCATATATCAAAG CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
genomic: CTTCTCTTGCGACCATTCC---GTTCGATCCATATATCAAAGgtatgttgct ... ttttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCA
ttagcttccacgtttctaaatttccagagatgacactatttcgcattttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAG
ttctaaa putative branch site (score: 2)
catttttt putative PPT
tttctaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttcttttcatttaagtttgaacattgttgatgaagaacagatttagcttccacgtttctaaatttccagagatgacactatttcgcattttttgcagCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAG
- - - - - - - - agtttga
- - - - - - - - - - - - - - - - - gaagaac
- - - - - - - - - - - - - - - - - - - - - gatttag