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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctaacttttcatctttctctcttttactataatctttcagactctatccttcttcttgttctgcctttttttttttttgctgtttgatttttcttaatggggttttgcttttgttgcaattggttggaatttgtggatgtcagGTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGCATCATCGTGATCATGAACTTCAGATTGTATCTGACGATTGTGCTCATAATAAA

Basic information

species Arabidopsis thaliana
transcript AT1G77810.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483091|gb|EG525683.1|EG525683
EST:     CCATTTCTCTGCATCTCTTTCTTCGCTCTCGGAGCAATCTTCACCTCCAG                         GTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGATAATTTCACAGCATCA
genomic: CCATTTCTCTGCATCTCTTTCTTCGCTCTCGGAGCAATCTTCACCTCCAGgtctctaact ... tggatgtcagGTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGCATCA
EST: gi|301502422|gb|HO207962.1|HO207962
EST:     CCATTTCTCTGCATCTCTTTCTTCGCTCTCGGAGCAATCTTCACCTCCAG                         GTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGCATCA
genomic: CCATTTCTCTGCATCTCTTTCTTCGCTCTCGGAGCAATCTTCACCTCCAGgtctctaact ... tggatgtcagGTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttaatggggttttgcttttgttgcaattggttggaatttgtggatgtcagGTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGCATCATCGTGATCATGAACTTCAGATTGTATCTGACGATTGTGCTCATAATAAA
   tcttaat  putative branch site (score: 3)
                    ttttgtt  TA-rich tract