1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttgcattgactcatacctttatagcaaaataattaacataatctccgttctaatcatttgtatctggtgacagAAAGCTCCGAGTGGGATCAGAACAGAGGAG
species | Arabidopsis thaliana |
transcript | AT1G77420.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGATCACTGCTTGTTCAAG AAAGCTCCGAGTGGGATCAGAACAGAGGAGEST: gi|19878944|gb|AU239775.1|AU239775
genomic: CTGGATCACTGCTTGTTCAAGgttgcattga ... ctggtgacagAAAGCTCCGAGTGGGATCAGAACAGAGGAG
EST: GTTCCGCTTTTGTTGACTTGCAGCTTCAGCTGGATCACTGCTTGTTCAAG AAAGCTCCGAGTGGGATCAGAACAGAGGAGEST: gi|116486369|gb|EG528961.1|EG528961
genomic: GTTCCGCTTTTGTTGACTTGCAGCTTCAGCTGGATCACTGCTTGTTCAAGgttgcattga ... ctggtgacagAAAGCTCCGAGTGGGATCAGAACAGAGGAG
EST: TTGACTTGCAGCTTCAGCTGGATCACTGCTTGTTCAAG AAAGCTCCGAGTGGGATCAGAACAGAGGAG
genomic: TTGACTTGCAGCTTCAGCTGGATCACTGCTTGTTCAAGgttgcattga ... ctggtgacagAAAGCTCCGAGTGGGATCAGAACAGAGGAG
ttatagcaaaataattaacataatctccgttctaatcatttgtatctggtgacagAAAGCTCCGAGTGGGATCAGAACAGAGGAG
ttctaat putative branch site (score: 2)
aaaataattaacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcattgactcatacctttatagcaaaataattaacataatctccgttctaatcatttgtatctggtgacagAAAGCTCCGAGTGGGATCAGAACAGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG