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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcttctcttctcttctcttctcttctcttccgtgtcattgctttgttattaagtatcattcagaatttgaatcaaaactctacttttgtgtcttgcagAACCTTTAGAGAGAGAAAAACAAATGTCGTTCCGTAGCATAGTTCGTGATGTGAGAGATAGTATAGGAAGTCTATCGAGGCGTAGTTTCGACTTTAAGTT

Basic information

species Arabidopsis thaliana
transcript AT1G76900.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76900.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G19520.4 (Glycine max), 3'ss of exon 3
tttcttctcttctcttctcttctcttctcttccgtgtcattgctttgttattaagtatcattcagaatt-tgaatcaaaactctacttttgtgtcttgcagAACCTTTAGAGAGAGAAAAACA---AATGTCGTTCCGTAGCATAGTTCGTGATGTGAGAGATAGTATAGGAAGTCTATCGAGGCGTAGTTTCGACTTTAAGTT----------------------
                          || | | |  |    ||  | |  | |    |  || |  ||  |   ||| || |  ||    |     |  | ||   |||  | |    |       |||||| ||||| ||||||||||||||||| || |||||| | || ||  |||| ||||||||||| ||  | |   |                      
-------------------------actttgctgaatggcagccatatgctcaca-gtggttgaatatagtacgtcagaagttcacacaagatatatatataattattattgggtaccacctgcagAATGTCATTCCGCAGCATAGTTCGTGATGTAAGGGATAGTTTCGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGACTTACTGGGCATCATAGAGGAAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttattaagtatcattcagaatttgaatcaaaactctacttttgtgtcttgcagAACCTTTAGAGAGAGAAAAACAAATGTCGTTCCGTAGCATAGTTCGTGATGTGAGAGATAGTATAGGAAGTCTATCGAGGCGTAGTTTCGACTTTAAGTT
                                       cttttgt  CT-rich tract
                    aatttgaatcaaaa  TA-rich tract