1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgcgaattttaccttccttcttcactttctaggttttgccttagttagcgaatttgccaaatttgaattcttggtgcagTTAGCCGAGCTTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCCCGATTCGCCTCAAAAGCAAATCAGGTTTCTTACACTTTCTG
species | Arabidopsis thaliana |
transcript | AT1G76730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATCATCGAATCCCTAATTTCGTCGGTGCATCGGCCTGCTGCAAGAAAA TTAGCCCGAGCTTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCCEST: gi|164105205|gb|ES067926.1|ES067926
genomic: TCATCATCGAATCCCTAATTTCGTCGGTGCATCGGC-TGCTGCAAGAAAAgtttgcgaat ... cttggtgcagTTAGCC-GAGCTTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCC
EST: TTCATCATCGAATCCCTAATTTCGTCGGTGCATCGGCTGCTGCAAGAAAA TTAGCCGAGCTTGATGCTTTTCGTATGGCTATGGTCGEST: gi|124890632|gb|EH969534.1|EH969534
genomic: TTCATCATCGAATCCCTAATTTCGTCGGTGCATCGGCTGCTGCAAGAAAAgtttgcgaat ... cttggtgcagTTAGCCGAGCTTGATGCTTTTCGTATGGCTATGGTCG
EST: CGGTGCATCGGCTGCTGCAAGAAAA TTAGCCGAGCTTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCCC
genomic: CGGTGCATCGGCTGCTGCAAGAAAAgtttgcgaat ... cttggtgcagTTAGCCGAGCTTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCCC
ctttctaggttttgccttagttagcgaatttgccaaatttgaattcttggtgcagTTAGCCGAGCTTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCCCGATTCGCCTCAAAAGCAAATCAGGTTTCTTACACTTTCTG
ttctt CT-rich tract
aaatttgaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcgaattttaccttccttcttcactttctaggttttgccttagttagcgaatttgccaaatttgaattcttggtgcagTTAGCCGAGCTTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCCCGATTCGCCTCAAAAGCAAATCAGGTTTCTTACACTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA