1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcctctctctctctgactctgatctatctatctcccattagcttacacacttcatgaatctgacgatttctttgtttatatattccacagCTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGGTGTCAAACGCAACGGGACTATCAGCTTCTAAGCATGTTCCTCTTTGGGA
species | Arabidopsis thaliana |
transcript | AT1G76670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAATAAACAGCTCATGTCTTCCTCNGGTTTCGGTTTTGGCTTTG CTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGGEST: gi|125020673|gb|EL092942.1|EL092942
genomic: CTAATAAACAGCTCATGTCTTCCTCTGGTTTCGGTTTTGGCTTTGgtatgcctct ... tattccacagCTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGG
EST: CATGGCTAATAAACAGCTCATGTCTTCCTCTGGTTTCGGTTTTGGCTTTG CTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGGEST: gi|124825802|gb|EH910668.1|EH910668
genomic: CATGGCTAATAAACAGCTCATGTCTTCCTCTGGTTTCGGTTTTGGCTTTGgtatgcctct ... tattccacagCTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGG
EST: TCTTCCTCTGGTTTCGGTTTTGGCTTTG CTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGG
genomic: TCTTCCTCTGGTTTCGGTTTTGGCTTTGgtatgcctct ... tattccacagCTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGG
cattagcttacacacttcatgaatctgacgatttctttgtttatatattccacagCTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGGTGTCAAACGCAACGGGACTATCAGCTTCTAAGCATGTTCCTCTTTGGGA
atctgac putative branch site (score: 3)
atttctttgtttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcctctctctctctgactctgatctatctatctcccattagcttacacacttcatgaatctgacgatttctttgtttatatattccacagCTACAACGTTAACGGGATTTCACTTTGCATTCACTGCTCTTGTTGGTATGGTGTCAAACGCAACGGGACTATCAGCTTCTAAGCATGTTCCTCTTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT