1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttcagtctgtttgtaactgatgaagtttttctagtagtttcagtatgaggtttggatttttgtgttcctaaatcttttaactcaactgttacattgcagGGTTCTTCTTCTCTTCTTCCTAGACGATCTCTCAATCAAGAGTCTAATCCTTATTTTGATTCTGATTCGAGTTTTTTGACATCGCGGGCTGAGCAGACTG
species | Arabidopsis thaliana |
transcript | AT1G73760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAAAATCGATGGAGATAAAACCAATAGTAACAGTAATAATCATAGAGAG GGTTCTTCTTCTCTTCTTCCTAGACGATEST: gi|47831039|gb|CK120723.1|CK120723
genomic: GCAAAATCGATGGAGATAAAACCAATAGTAACAGTAATAATCATAGAGAGgtacatttac ... tacattgcagGGTTCTTCTTCTCTTCTTCCTAGACGAT
EST: GCAAAATCGATGGAGATAAAACCAATAGTAACAGTAATAATCATAGAGAG GGTTCTTCTTCTCTTCTTCCTAGACGATCTCTCAATCAAGAGTCTAATCCT
genomic: GCAAAATCGATGGAGATAAAACCAATAGTAACAGTAATAATCATAGAGAGgtacatttac ... tacattgcagGGTTCTTCTTCTCTTCTTCCTAGACGATCTCTCAATCAAGAGTCTAATCCT
atgaggtttggatttttgtgttcctaaatcttttaactcaactgttacattgcagGGTTCTTCTTCTCTTCTTCCTAGACGATCTCTCAATCAAGAGTCTAATCCTTATTTTGATTCTGATTCGAGTTTTTTGACATCGCGGGCTGAGCAGACTG
ttttaac putative branch site (score: 2)
taaatcttttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcagtctgtttgtaactgatgaagtttttctagtagtttcagtatgaggtttggatttttgtgttcctaaatcttttaactcaactgttacattgcagGGTTCTTCTTCTCTTCTTCCTAGACGATCTCTCAATCAAGAGTCTAATCCTTATTTTGATTCTGATTCGAGTTTTTTGACATCGCGGGCTGAGCAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactcaa