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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactactctgcaatcccttctcttttttatcttttggactctgttttcattttgtaatcgttgaaacttggacagGAGTTTCAAGGAGTGTCCTCATCCAGATGAGAAACAGAGGAACCAGCTTAGCAGAGAATTGGGTTTGGCTCCAAGACAAATCAAGTTCTGGTTTCAGAAC

Basic information

species Arabidopsis thaliana
transcript AT1G73360.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73360.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 1
---------gtactactctgcaatcccttctcttttttatcttttggactctgttttcattttgtaat-cgttgaaacttggacagGAGTTTCAAGGAGTGTCCTCATCCAGATGAGAAACAGAGGAACCAGCTTAGCAGAGAATTGGGTTTGGCTCCAAGACAAATCAAGTTCTGGTTTCAGAAC
          |   | | || |||  ||| | || ||| | | ||||  |  |     | |||| |||    |     |     ||||  ||||||||||||||||| ||||||||||| ||||||   ||| | |||||||| |||| ||||||||| || || ||||| || |||||||| || 
gtaagattgatgagagt-tgaaatttcttat-ttgtttgtttgttgg-tttggcaaatagtttgaaatataatattggtaatgaagGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttttatcttttggactctgttttcattttgtaatcgttgaaacttggacagGAGTTTCAAGGAGTGTCCTCATCCAGATGAGAAACAGAGGAACCAGCTTAGCAGAGAATTGGGTTTGGCTCCAAGACAAATCAAGTTCTGGTTTCAGAAC
                       ttttcattttgtaat  TA-rich tract