1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtatttgtgctagtgtgtgttattgttgctcttttattgtaatttacaattgtaagtggtgagtatggaacttagtttttgaagttttcgtcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTGAGAACCCACAGGACATCATCGTCCAGTC
species | Arabidopsis thaliana |
transcript | AT1G72370.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCGAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|164109959|gb|ES068449.1|ES068449
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAEST: gi|116455944|gb|EG498536.1|EG498536
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCA
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|124786436|gb|EH876115.1|EH876115
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: AGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGACAAAACATAGGGAAAAGCTCCAGATGGCEST: gi|116455943|gb|EG498535.1|EG498535
genomic: AGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGG-CAAAACAT-GGGAAAAGCTCCAGATGGC
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|116423188|gb|EG465780.1|EG465780
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTGCATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|164192969|gb|ES076002.1|ES076002
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: AGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|301501781|gb|HO207321.1|HO207321
genomic: AGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|164071576|gb|ES109912.1|ES109912
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGEST: gi|124765690|gb|EH855820.1|EH855820
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTG
EST: ATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACGTGGGAAAAGCTCCAGATGGCTGEST: gi|125256549|gb|EL270634.1|EL270634
genomic: ATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: ATTGCAATTACCAGATGGTAGTCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGAEST: gi|116470236|gb|EG512828.1|EG512828
genomic: ATTGCAATTACCAGATGG-AG-CGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGA
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCGAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|124881581|gb|EH960483.1|EH960483
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: ATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|164092285|gb|ES118346.1|ES118346
genomic: ATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTAATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCEST: gi|125056265|gb|EL126060.1|EL126060
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTA-TTTACATCTTCAACCTTGGCAAAACATGGGAAAAGC
EST: TTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|125041572|gb|EL113841.1|EL113841
genomic: TTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACAEST: gi|164121380|gb|EL997853.1|EL997853
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACA
EST: GTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|116470237|gb|EG512829.1|EG512829
genomic: GTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCGAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|47830956|gb|CK120640.1|CK120640
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|124847331|gb|EH931768.1|EH931768
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: TTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|164053399|gb|ES006673.1|ES006673
genomic: TTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: AGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|125241052|gb|EL255137.1|EL255137
genomic: AGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACGTCTTCAACCTTGGCAEST: gi|125033479|gb|EL105748.1|EL105748
genomic: GAATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCA
EST: ACGCAACGATG GTACTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGEST: gi|164048462|gb|ES140628.1|ES140628
genomic: ACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
EST: GGAGCGTTACGTCTTCAAGAGACGCAACGATG GTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
genomic: GGAGCGTTACGTCTTCAAGAGACGCAACGATGgtaatttctc ... tcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTG
acaattgtaagtggtgagtatggaacttagtttttgaagttttcgtcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTGAGAACCCACAGGACATCATCGTCCAGTC
ttttcgtcattctc CT-rich tract
ttagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtgctagtgtgtgttattgttgctcttttattgtaatttacaattgtaagtggtgagtatggaacttagtttttgaagttttcgtcattctcagGTATTTACATCTTCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTGAGAACCCACAGGACATCATCGTCCAGTC
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