1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattaaactctctcgctccctcctcttctatctctgtcaatttatatattggttagtttttagggattttgttttggggttcgaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATCAGAAGCAATCAGTGAAAAAGGTGTTTGCTCAAGGTTATAAGGCTAAGG
species | Arabidopsis thaliana |
transcript | AT1G71760.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCGACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATEST: gi|116416515|gb|EG459107.1|EG459107
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATEST: gi|116416460|gb|EG459052.1|EG459052
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATEST: gi|116416526|gb|EG459118.1|EG459118
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATEST: gi|116416482|gb|EG459074.1|EG459074
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATEST: gi|116416315|gb|EG458907.1|EG458907
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATEST: gi|116416282|gb|EG458874.1|EG458874
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCGACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATEST: gi|116416326|gb|EG458918.1|EG458918
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATEST: gi|116416415|gb|EG459007.1|EG459007
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
EST: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAG GTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
genomic: CGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGgtattaaact ... gaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAAT
caatttatatattggttagtttttagggattttgttttggggttcgaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATCAGAAGCAATCAGTGAAAAAGGTGTTTGCTCAAGGTTATAAGGCTAAGG
ttagttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaaactctctcgctccctcctcttctatctctgtcaatttatatattggttagtttttagggattttgttttggggttcgaattcgcagGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATCAGAAGCAATCAGTGAAAAAGGTGTTTGCTCAAGGTTATAAGGCTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA