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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagaattagccgaatatcaagagtagtagcttatgctatatgttaacaatttcaatctcagGTAATGGGGGTGATTATATCGCCAACTAGAGAGCTATCAGCGCAGATACATAAGGTGGCAGAGCCATTTGTCTCGACTTTGCCAAATGTGAACTCTGTCC

Basic information

species Arabidopsis thaliana
transcript AT1G71370.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878322|gb|AU239153.1|AU239153
EST:     TCATAGAGATTATCCGTCGATCCAACTCCTACCCTCCGAAGCCACACCAG                         GTAATGGGGGTGATTATATCGCCAACTAGAGAGCTATCAGCGCAGATACAT
genomic: TCATAGAGATTATCCGTCGATCCAACTCCTACCCTCCGAAGCCACACCAGgtaaggagaa ... tcaatctcagGTAATGGGGGTGATTATATCGCCAACTAGAGAGCTATCAGCGCAGATACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagccgaatatcaagagtagtagcttatgctatatgttaacaatttcaatctcagGTAATGGGGGTGATTATATCGCCAACTAGAGAGCTATCAGCGCAGATACATAAGGTGGCAGAGCCATTTGTCTCGACTTTGCCAAATGTGAACTCTGTCC
                                  tgttaac  putative branch site (score: 2)
                              tatatgttaacaattt  TA-rich tract