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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttccgatcttatggattgaatgaattttgtgtgttggttttaacaatttgatccgatccgatgagatttgaatttacgcattgtttcgtaattttacagGTGAAAGTGTTTAAGCAACCAAATTACCTTGAAAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G70730.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878337|gb|AU239168.1|AU239168
EST:     NTTCGCCTATTGATGGCCAGAAACCTGGGACTTCTGGACTCCGTAAGAAG                         GTGAAAGTGTTTAAGCAACCAAATTACCTTGAAAATTTTGTCCAGGCAACG
genomic: -TTCGCCTATTGATGGCCAGAAACCTGGGACTTCTGGACTCCGTAAGAAGgttcgttcgc ... aattttacagGTGAAAGTGTTTAAGCAACCAAATTACCTTGAAAATTTTGTCCAGGCAACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgatccgatccgatgagatttgaatttacgcattgtttcgtaattttacagGTGAAAGTGTTTAAGCAACCAAATTACCTTGAAAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAG
 atttgat  putative branch site (score: 5)
                     atttgaattta  TA-rich tract