1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacatctggaagtgtgatttcttgattagagagagttctgtatgattcagaagaagttgatagtgtttagagtttggtgtgtgacttttatgtacatcagGATTTTCCAGGAGCACATCATCCGCAGAGGCCGGTGGTGTATTAGGAGGGTCTACTCGTGGTTTTTTAACTTGTTGATGCAGTCTTATTGGAACGAG
species | Arabidopsis thaliana |
transcript | AT1G69520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACACCGA-TTTTTCACTCCTC-TTTTTTCACAATGCTCGGTGTTCAAAG GATTTTCCAGGAGCACATCATCCGCAGAG
genomic: TACACCGATTTTTTCACTCCTCTTTTTTTCACAATGCTCGGTGTTCAAAGgtaaggatcg ... tgtacatcagGATTTTCCAGGAGCACATCATCCGCAGAG
ttcagaagaagttgatagtgtttagagtttggtgtgtgacttttatgtacatcagGATTTTCCAGGAGCACATCATCCGCAGAGGCCGGTGGTGTATTAGGAGGGTCTACTCGTGGTTTTTTAACTTGTTGATGCAGTCTTATTGGAACGAG
agttgat putative branch site (score: 5)
cttttat putative PPT
ttttatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatctggaagtgtgatttcttgattagagagagttctgtatgattcagaagaagttgatagtgtttagagtttggtgtgtgacttttatgtacatcagGATTTTCCAGGAGCACATCATCCGCAGAGGCCGGTGGTGTATTAGGAGGGTCTACTCGTGGTTTTTTAACTTGTTGATGCAGTCTTATTGGAACGAG
- - - - - - - - - - - - - - - - - - - - - - - - -gaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtttgg