Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47831475|gb|CK121159.1|CK121159EST: CACCGCGTAGGCCTAAGAAACGATCAAGAACTGTTCAAAAACAGATCGAT TTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAAT
genomic: CACCGCGTAGGCCTAAGAAACGATCAAGAACTGTTCAAAAACAGATCGATgtaagtcgaa ... ttgtttacagTTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAAT
EST:
gi|47829631|gb|CK119315.1|CK119315EST: CACCGCGTAGGCCTAAGAAACGATCAAGAACTGTTCAAAAACAGATCGAT TTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAAT
genomic: CACCGCGTAGGCCTAAGAAACGATCAAGAACTGTTCAAAAACAGATCGATgtaagtcgaa ... ttgtttacagTTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAAT
EST:
gi|116463728|gb|EG506320.1|EG506320EST: CCCCGCGTAGGCCTAAGAAACGATCAAGAACTGTTCAAAAACAGATCGAT TTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAAT
genomic: CACCGCGTAGGCCTAAGAAACGATCAAGAACTGTTCAAAAACAGATCGATgtaagtcgaa ... ttgtttacagTTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgttgttgagattttgtttggttaaagtgttctgattttggtttgtttacagTTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAATGTTCCTGACCAAGCTGAGAAGAGAAAG
ttctgat putative branch site (score: 3)
tttgttt putative PPT
attttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtcgaaaacttcgcagctttttttttgttgttgttgagattttgtttggttaaagtgttctgattttggtttgtttacagTTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAATGTTCCTGACCAAGCTGAGAAGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA