1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattgcttaattgcttaagcttctcaaactccatctctcttctcgctgatttgacctagaaatcttcttccctaattttctttaccctgtctttgctgatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGT
species | Arabidopsis thaliana |
transcript | AT1G67430.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTEST: gi|164153102|gb|EL993292.1|EL993292
genomic: CAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGT
EST: CGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGEST: gi|164000956|gb|ES067483.1|ES067483
genomic: CGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGG
EST: AGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCEST: gi|124737861|gb|EH829263.1|EH829263
genomic: AGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGC
EST: AGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACTAAGTCTTGCAAGGEST: gi|164183703|gb|ES166737.1|ES166737
genomic: AGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGG
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGANAATCAGACCAAGTCTTGCEST: gi|164044071|gb|ES199660.1|ES199660
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGC
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGEST: gi|125278342|gb|EL292427.1|EL292427
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGG
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGEST: gi|164194053|gb|ES102605.1|ES102605
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTG
EST: CAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCEST: gi|125008017|gb|EL080286.1|EL080286
genomic: CAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTC
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTEST: gi|125165449|gb|EL191727.1|EL191727
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGT
EST: ATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGEST: gi|164151622|gb|ES035571.1|ES035571
genomic: ATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAG
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTAACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCEST: gi|125000681|gb|EL072950.1|EL072950
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTA-CTCGCAAGAACCCGACAATCAGACCAAGTCTTGC
EST: GCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTEST: gi|164087340|gb|ES039193.1|ES039193
genomic: GCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGT
EST: ACATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCEST: gi|125119451|gb|EL167668.1|EL167668
genomic: ACATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATC
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGGCCAAGTCTTGEST: gi|125215165|gb|EL229331.1|EL229331
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTG
EST: AGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGEST: gi|163970163|gb|ES169461.1|ES169461
genomic: AGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGG
EST: CTTCTGCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGEST: gi|124906666|gb|EH980746.1|EH980746
genomic: CTTCTGCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAG
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAG-CCAAGTCTTGCAAGGEST: gi|164048488|gb|ES142866.1|ES142866
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGG
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCEST: gi|125312644|gb|EL326729.1|EL326729
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTC
EST: ATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCCGACAATCAGEST: gi|125157673|gb|EL186629.1|EL186629
genomic: ATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCC-GACAATCAG
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAAGTCTTGEST: gi|124963858|gb|EL038165.1|EL038165
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAA-GTCTTG
EST: ACATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATEST: gi|164012311|gb|ES085336.1|ES085336
genomic: ACATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAAT
EST: TCACATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAAEST: gi|152035881|gb|BP863620.2|BP863620
genomic: TCACATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAA
EST: ATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTEST: gi|164065892|gb|ES216334.1|ES216334
genomic: ATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGT
EST: CCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCEST: gi|125021887|gb|EL094156.1|EL094156
genomic: CCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGC
EST: CCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTEST: gi|164219594|gb|ES063028.1|ES063028
genomic: CCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGT
EST: CTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGCEST: gi|124749863|gb|EH839993.1|EH839993
genomic: CTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGC
EST: GCAGCCGATTCTTCTATTAGCCGCCACG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGEST: gi|164226224|gb|ES006494.1|ES006494
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGG
EST: GCAGCCGATTCTTCTATTAGCCGCCATG GTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGC
genomic: GCAGCCGATTCTTCTATTAGCCGCCATGgtaattgctt ... gatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGTCTTGC
gacctagaaatcttcttccctaattttctttaccctgtctttgctgatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGT
tgctgat putative branch site (score: 3)
taattttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgcttaattgcttaagcttctcaaactccatctctcttctcgctgatttgacctagaaatcttcttccctaattttctttaccctgtctttgctgatttcgcagGTGAAGTACTCGCAAGAACCCGACAATCAGACCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC