1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacctctttgtgaagaaatctccatgattgttgttctgttttatcttatagagttgttttgtttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGAT
species | Arabidopsis thaliana |
transcript | AT1G64350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAMGAATAAGTCTAEST: gi|116480252|gb|EG522844.1|EG522844
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044893|gb|DR340648.1|DR340648
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044886|gb|DR340641.1|DR340641
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044884|gb|DR340639.1|DR340639
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044891|gb|DR340646.1|DR340646
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|116457542|gb|EG500134.1|EG500134
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044879|gb|DR340634.1|DR340634
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044883|gb|DR340638.1|DR340638
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044881|gb|DR340636.1|DR340636
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044894|gb|DR340649.1|DR340649
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044887|gb|DR340642.1|DR340642
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044877|gb|DR340632.1|DR340632
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: TTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|116430790|gb|EG473382.1|EG473382
genomic: T-GCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|116430791|gb|EG473383.1|EG473383
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAEST: gi|86044878|gb|DR340633.1|DR340633
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
EST: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAG ACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
genomic: CTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGgtaacctctt ... tttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTA
aatctccatgattgttgttctgttttatcttatagagttgttttgtttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGAT
ttttgttttt CT-rich tract
tgttttatcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctctttgtgaagaaatctccatgattgttgttctgttttatcttatagagttgttttgtttttggtagACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG