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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgatcgagtttttattctttttctttctagggtttgttttgttatctctgtgattgaattgtggattttgtgttttttgcctttagATGAAGATAGGAGAGGTGAAGGGAATGATTTGCCTCAGTTTCGTGAATTCTCAATTGAGACGTTGAGGAACGCAACATCAGGATTTGCTACAGAGAATAT

Basic information

species Arabidopsis thaliana
transcript AT1G63500.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875045|gb|AU235876.1|AU235876
EST:     TTGTTGTGTTTCTGATCCTGAAGGATCTAATCATGGTGTCACAGGGTTAG                         ATGAAGATAGGAGAGGTGAAGGGAATGATTNGCCT
genomic: TTGTTGTGTTTCTGATCCTGAAGGATCTAATCATGGTGTCACAGGGTTAGgtaacgatcg ... ttgcctttagATGAAGATAGGAGAGGTGAAGGGAATGATTTGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttttgttatctctgtgattgaattgtggattttgtgttttttgcctttagATGAAGATAGGAGAGGTGAAGGGAATGATTTGCCTCAGTTTCGTGAATTCTCAATTGAGACGTTGAGGAACGCAACATCAGGATTTGCTACAGAGAATAT
                                       tgttttttgccttt  CT-rich tract
                                 attttgtgtttttt  TA-rich tract