Sequence
atgc intronic sequence ATGC exonic sequence...gttccttgttgatcctgtttctgaacttaatctgtattcataagccttttgttcattggttacttaattctttttgatggctgctctgttgtttctttagATACCGGTGCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCAAAACGTCTCTTGCATGAGAAACGCGCAGCAGA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G63270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86070627|gb|DR366384.1|DR366384EST: AATCCAATCTCTGAGCTCGTTATCACCACCACCACCGTCTTTCCTCTCCG ATACCGGTGCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATC
genomic: AATCCAATCTCTGAGCTCGTTATCACCACCACCACCGTCTTTCCTCTCCGgtaagttgtc ... gtttctttagATACCGGTGCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATC
EST:
gi|164177912|gb|ES008650.1|ES008650EST: AATCCAATCTCTGAGCTCGTTATCACCACCACCACCGTCTTTCCTCTCCG ATACCGGTGCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATC
genomic: AATCCAATCTCTGAGCTCGTTATCACCACCACCACCGTCTTTCCTCTCCGgtaagttgtc ... gtttctttagATACCGGTGCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttgttcattggttacttaattctttttgatggctgctctgttgtttctttagATACCGGTGCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCAAAACGTCTCTTGCATGAGAAACGCGCAGCAGA
ttttgat putative branch site (score: 4)
ctctgttgtttcttt putative PPT
ttacttaattcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttccttgttgatcctgtttctgaacttaatctgtattcataagccttttgttcattggttacttaattctttttgatggctgctctgttgtttctttagATACCGGTGCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCAAAACGTCTCTTGCATGAGAAACGCGCAGCAGA
- - - - - - - ctgtttc
- - - - - - - - - - - -aacttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctct