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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggttttggtgtagttaacgaattaggtttctttcttcagagatatttaagcttttgcaaaatcaaaagtgtgatgatttttgtatcttatctggttcagGTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACTTCTCCTCAACCGTTTCTTCCTTTCATTGCACCTTCTCCAATGGTTCCATA

Basic information

species Arabidopsis thaliana
transcript AT1G61900.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125235841|gb|EL249926.1|EL249926
EST:     GAGATGGGTTTGTTCGTGATTCTTCAATCCATGTTTCTGATATCTCTAT                         GTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGA
genomic: GAGATGGGTTTGTTCGTGATTCTTCAATCCATGTTTCTGATATCTCTATgtgagtttcc ... tctggttcagGTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGA
EST: gi|125120686|gb|EL168276.1|EL168276
EST:     CGTGATTCTTCAATCCATGTTTCTGATATCTCTAT                         GTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACTT
genomic: CGTGATTCTTCAATCCATGTTTCTGATATCTCTATgtgagtttcc ... tctggttcagGTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACTT
EST: gi|125284574|gb|EL298659.1|EL298659
EST:     TGGGTTTGTTCGTGATTCTTCAATCCATGTTTCTGATATCTCTAT                         GTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACT
genomic: TGGGTTTGTTCGTGATTCTTCAATCCATGTTTCTGATATCTCTATgtgagtttcc ... tctggttcagGTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACT
EST: gi|124864735|gb|EH949172.1|EH949172
EST:     GTTCGTGATTCTTCAATCCATGTTTCTAGATATCTCTAT                         GTTCATCACAGAAACCTGAGGAGTTCTTA
genomic: GTTCGTGATTCTTCAATCCATGTTTCT-GATATCTCTATgtgagtttcc ... tctggttcagGTTCATCACAGAAACCTGAGGAGTTCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaagcttttgcaaaatcaaaagtgtgatgatttttgtatcttatctggttcagGTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACTTCTCCTCAACCGTTTCTTCCTTTCATTGCACCTTCTCCAATGGTTCCATA
                                        tcttatct  CT-rich tract
                               atttttgtatcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggttttggtgtagttaacgaattaggtttctttcttcagagatatttaagcttttgcaaaatcaaaagtgtgatgatttttgtatcttatctggttcagGTTCATCACAGAAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACTTCTCCTCAACCGTTTCTTCCTTTCATTGCACCTTCTCCAATGGTTCCATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC